{"id":4913,"date":"2024-12-06T11:15:38","date_gmt":"2024-12-06T10:15:38","guid":{"rendered":"https:\/\/cnatm-1.betapage.de\/?page_id=4913"},"modified":"2026-01-21T10:51:45","modified_gmt":"2026-01-21T09:51:45","slug":"publikationen","status":"publish","type":"page","link":"https:\/\/cnatm.de\/en\/publikationen\/","title":{"rendered":"Publications"},"content":{"rendered":"
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Here you will find the latest publications from our research cluster. We invite you to use the articles to find out about the latest developments in our research areas.<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t

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\n\t\t\t\t\t\n\t\t\t\t\t\t\n\t\t\t\t\t\t\t\t\tRead more about our projects<\/span>\n\t\t\t\t\t<\/span>\n\t\t\t\t\t<\/a>\n\t\t\t\t<\/div>\n\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t
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2026<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t
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Enhancing link prediction in biomedical knowledge graphs with BioPathNet<\/h3>

Emy Yue Hu, Svitlana Oleshko, Samuele Firmani, Hui Cheng, Zhaocheng Zhu, Maria Ulmer, Matthias Arnold, Maria Colom\u00e9-Tatch\u00e9, Jian Tang, Sophie Xhonneux & Annalisa Marsico<\/p>

Nat. Biomed. Eng<\/i> (2026<\/strong>). https:\/\/doi.org\/10.1038\/s41551-025-01598-z<\/p>

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2025<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t
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Single cell spatial transcriptomics integration deciphers the morphological heterogeneity of atherosclerotic carotid arteries.<\/strong><\/h3>

Jessica Pauli, Daniel Garger, Fatemeh Peymani, Justus Wettich, Nadja Sachs, Johannes Wirth, Katja Steiger, Christina Hillig, Hanrui Zhang, Ira Tabas, Alan Tall, Mingyao Li, Muredach P. Reilly, Daniela Branzan, Holger Prokisch, Michael P. Menden & Lars Maegdefessel<\/p>

Nat Commun<\/i> 16, 11282 (2025<\/strong>). https:\/\/doi.org\/10.1038\/s41467-025-67679-4<\/p>

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Allele-specific genomics decodes gene targets and mechanisms of the non-coding genome<\/strong><\/h3>

Hasenbein TP, Hoelzl S, Engelhardt S, Andergassen D.<\/p>

(2025)<\/strong> Nucleic Acids Research<\/em>, Volume 53, Issue 19, 28 October 2025, gkaf912, doi: 10.1093\/nar\/gkaf912<\/p>

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Cytoplasmic DIS3 is an exosome-independent endoribonuclease with catalytic activity toward circular RNAs<\/h3>

Latini C, Eichlinger J, Fuchs AL, Zhai SN, Ho-Xuan H, Lehmann G, Gla\u017ear P, Rajewsky N, Bruckmann A, Yang L, Sprangers R, Meister G.<\/p>

Cell Rep. 2025<\/strong> May 28;44(6):115769. doi: 10.1016\/j.celrep.2025.115769. Epub ahead of print. PMID: 40440169.<\/p>

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Dual pH-responsive CRISPR\/Cas9 ribonucleoprotein xenopeptide complexes for genome editing. <\/strong><\/h3>

L<\/strong>uo X, Germer J, Burghardt T, Grau M, Lin Y, H\u00f6hn M, L\u00e4chelt U, Wagner E.<\/p>

(2025) <\/strong>Eur J Pharm Sci. 205, 106983. doi:10.1016\/j.ejps.2024.106983106983.<\/p>

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Ionic Coating of siRNA Polyplexes with cRGD-PEG-Hyaluronic Acid to Modulate Serum Stability and In Vivo Performance.\u00a0<\/strong><\/h3>

Vetter VC, Yazdi M, Gialdini I, P\u00f6hmerer J, Seidl J, H\u00f6hn M, Lamb DC, Wagner E.<\/p>

(2025) <\/strong>Biochemistry, 264, 1509-1529. doi:10.1021\/acs.biochem.4c00650.\u00a0<\/p>

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Evolution of Lipo-Xenopeptide Carriers for siRNA Delivery: Interplay of Stabilizing Subunits.\u00a0<\/strong><\/h3>

Yazdi M, Burghardt T, Seidl J, L\u00e4chelt U, Wagner E.<\/p>

(2025) <\/strong>Bioconjug Chem 36, 846-858.\u00a0 doi: 10.1021\/acs.bioconjchem.5c00096.<\/p>

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Novel Tet3 enzymes for next generation epigenetic sequencing<\/strong><\/h3>

Simisir, \u00d6, Walter, T, Sahin, H, Carell, T, Schneider, S.<\/p>

RCS Chem Biol. 2025<\/strong> doi: 10.1039\/D4CB00315B<\/p>

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Design and characterization of a micro RNA-200c detecting Broccoli fluorescent light-up aptamer<\/h3>

Kersten, C., Zahler, S., Schneider, S.<\/p>

ChemBioChem <\/em>2025<\/b>, doi: 10.1002\/cbic.202400772<\/p>

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STING activation improves T-cell-engaging immunotherapy for acute myeloid leukemia<\/strong><\/h3>

A. Linder, D. Nixdorf, N. Kuhl, I. Piseddu, T. T. Xu, A. V. Holtermann, G. Kuut, R. E. Endres, N. Philipp, V. L B\u00fccklein, J. de Graaff, T. Carell, S. Kobold, R. Kischel, V. Hornung, M. Subklewe<\/p>

Blood 2025<\/strong> doi: 10.1182\/blood.2024026934<\/p>

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2024<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t
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Synthesis and validation of clickable multimeric mannose ligands for dendritic cell targeting<\/h3>

L. Montiel, F. Spada, S. Bessinovo, A. Crisp, C. Berger, S. Wiedemann, T. Carell, T. Frischmuth<\/p>

J. Carbohyd. Chem.,\u00a02024<\/strong>, doi: 10.1080\/07328303.2024.2418524<\/p>

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A Phosphotriester-Masked Dideoxy-cGAMP Derivative as a Cell-Permeable STING Agonist<\/h3>

D. \u00d6zdemir, A. Pappa, S. Veth, S. Stazzoni, M. M\u00fcller, V. Hornung, T. Carell<\/p>

Angew. Chem. Int. Ed. 2024<\/strong>, doi: 10.1002\/anie.202416353<\/p>

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Genome-scale pan-cancer interrogation of lncRNA dependencies using CasRx <\/strong><\/h3>

Montero JJ, Trozzo R, Sugden M, \u00d6llinger R, Belka A, Zhigalova E, Waetzig P, Engleitner T, Schmidt-Supprian M, Saur D, Rad R.<\/p>

Nat Methods. 2024<\/strong> Apr;21(4):584-596.<\/p>

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Lipo-Xenopeptide Polyplexes for CRISPR\/Cas9 based Gene editing at ultra-low dose<\/h3>

Germer J, Lessl AL, P\u00f6hmerer J, Grau M, Weidinger E, H\u00f6hn M, Yazdi M, Cappelluti MA, Lombardo A, L\u00e4chelt U, Wagner E.<\/p>

J Control Release. 2024<\/strong> Jun;370:239-255. doi: 10.1016\/j.jconrel.2024.04.037. Epub 2024 Apr 27.<\/p>

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In Vivo Endothelial Cell Gene Silencing by siRNA-LNPs Tuned with Lipoamino Bundle Chemical and Ligand Targeting<\/strong><\/h3>

Yazdi M, P\u00f6hmerer J, Hasanzadeh Kafshgari M, Seidl J, Grau M, H\u00f6hn M, Vetter V, Hoch CC, Wollenberg B, Multhoff G, Bashiri Dezfouli A, Wagner E.<\/p>

Small. 2024<\/strong> Oct;20(42):e2400643. doi: 10.1002\/smll.202400643. Epub 2024 Jun 25.<\/p>

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Dual Effect by Chemical Electron Transfer Enhanced siRNA Lipid Nanoparticles: Reactive Oxygen Species-Triggered Tumor Cell Killing Aggravated by Nrf2 Gene Silencing<\/strong><\/h3>

Zhang F, Burghardt T, H\u00f6hn M, Wagner E.<\/p>

Pharmaceutics. 2024<\/strong> Jun 7;16(6):779. doi: 10.3390\/pharmaceutics16060779.<\/p>

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Modulating efficacy and cytotoxicity of lipoamino fatty acid nucleic acid carriers using disulfide or hydrophobic spacers<\/strong><\/h3>

Steffens RC, Thalmayr S, Weidinger E, Seidl J, Folda P, H\u00f6hn M, Wagner E.<\/p>

Nanoscale. 2024 Jul 25;16(29):13988-14005. doi: 10.1039\/d4nr01357c.<\/p>

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New insights for the development of efficient DNA vaccines<\/strong><\/h3>

Berger S, Zeyn Y, Wagner E, Bros M.<\/p>

Microb Biotechnol. 2024<\/strong> Nov;17(11):e70053. doi: 10.1111\/1751-7915.70053.<\/p>

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Strategies and mechanisms for endosomal escape of therapeutic nucleic acids<\/strong><\/h3>

Grau M, Wagner E.<\/p>

Curr Opin Chem Biol. 2024<\/strong> Aug;81:102506. doi: 10.1016\/j.cbpa.2024.102506. Epub 2024 Aug 2.<\/p>

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Dual pH-responsive CRISPR\/Cas9 ribonucleoprotein xenopeptide complexes for genome editing<\/strong><\/h3>

Luo X, Germer J, Burghardt T, Grau M, Lin Y, H\u00f6hn M, L\u00e4chelt U, Wagner E.<\/p>

Eur J Pharm Sci. 2024<\/strong>. doi: 10.1016\/j.ejps.2024.106983. Epub 2024 Dec 7.<\/p>

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A comparative analysis of peptide-delivered antisense antibiotics using diverse nucleotide mimics<\/strong><\/h3>

Ghosh, C., Popella, L., Dhamodharan, V., Jung, J., Dietzsch, J., Barquist, L., H\u00f6bartner, C., & Vogel, J.
<\/strong><\/p>

(2024) <\/strong>RNA (New York, N.Y.), 30(6), 624\u2013643. https:\/\/doi.org\/10.1261\/rna.079969.124<\/p>

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TCRGenesis: Generation of SIINFEKL-specific T-cell receptor sequences using autoregressive Transformer<\/strong><\/h3>

Yang An, Felix Drost, Adrian Straub, Annalisa Marsico, Dirk H Busch, Benjamin Schubert.<\/p>

OpenReview.net, Published: 13 Oct 2024
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Noncoding RNAs in the Vasculature: Basic Mechanisms and Therapeutic Perspectives<\/h3>

Maegdefessel L, Boon RA, Dimmeler S.<\/p>

Arterioscler Thromb Vasc Biol. 2024<\/strong> Jan;44(1):3-6.<\/p>

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Efficient tandem Cu-catalyzed Click synthesis of multi-sugar-modified oligonucleotides<\/h3>

T\u00f6lke A.J., Gaisbauer J.F., G\u00e4rtner Y.V., Steigenberger B., Holovan A., Streshnev F., Schneider S., M\u00fcller M., Carell T.<\/p>

Angew. Chem. Int. Ed. Engl. 2024<\/strong>, e202405161. doi: 10.1002\/anie.202405161.<\/p>

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Kinetic Referencing Allows Identification of Epigenetic Cytosine Modifications by Single-Molecule Hybridization Kinetics and Superresolution DNA-PAINT Microscopy<\/strong><\/h3>

Bauer, J.; Reichl, A.; Tinnefeld, P.<\/p>

ACS nano 2024<\/strong>, 18, 1496\u20131503.<\/p>

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DNA Origami Vesicle Sensors with Triggered Single-Molecule Cargo Transfer<\/strong><\/h3>

B\u00fcber, E.; Yaadav, R.; Schr\u00f6der, T.; Franquelim, H. G.; Tinnefeld, P.<\/p>

Angew. Chem. Int. Ed. Engl. 2024<\/strong>, e202408295.<\/p>

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Controlled mechanochemical coupling of anti-junctions in DNA origami arrays<\/strong><\/h3>

Cole, F.; Pfeiffer, M.; Wang, D.; Schr\u00f6der, T.; Ke, Y.; Tinnefeld, P.<\/p>

Nat Commun 2024<\/strong>, 15, 7894.<\/p>

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Design of Experiments Grants Mechanistic Insights into the Synthesis of Spermine-Containing PBAE Copolymers<\/strong><\/h3>

Kromer APE, Sieber-Sch\u00e4fer F, Farfan JB, and Merkel OM<\/p>

ACS Applied Materials & Interfaces 2024<\/strong> 16 (29), 37545-37554; DOI: 10.1021\/acsami.4c06079<\/em><\/p>

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Lysosomal endonuclease RNase T2 and PLD exonucleases cooperatively generate RNA ligands for TLR7 activation<\/strong><\/h3>

M. B\u00e9routi, K. Lammens, M. Heiss, L. Hansbauer, S. Bauernfried, J. St\u00f6ckl, F. Pinci, I. Piseddu, W. Greulich, M. Wang, C. Jung, T. Fr\u00f6hlich, T. Carell, K.P. Hopfner, V. Hornung<\/p>

Immunity 2024<\/strong>, 10.1016\/j.immuni.2024.04.010\u00a0<\/p>

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Gradual evolution of a homo-L-peptide world on homo-D-configured RNA and DNA <\/strong><\/h3>

E. W\u0119grzyn, I. Mejdrova,\u00a0T. Carell\u00a0\u00a0<\/p>

Chem. Sci.\u00a02024<\/strong>, 10.1039\/d4sc03384a\u00a0<\/p>

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Generation of densely labeled oligonucleotides for the detection of small genomic elements <\/strong><\/h3>

C. Steinek, M. Guirao-Ortiz, G. Stumberger, A.J. T\u00f6lke, D. H\u00f6rl, T. Carell, H. Harz, H. Leonhardt<\/p>

Cells Rep. Methods 2024<\/strong>, 10.1016\/j.crmeth.2024.100840\u00a0<\/em><\/p>

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Step-by-Step Towards Biological Homochirality \u2013 from Prebiotic Randomness To Perfect Asymmetry<\/strong><\/h3>

I. Mejdrova, E. W\u0119grzyn, T. Carell<\/p>

Chem. – Asian J. 2024<\/strong>, 10.1002\/asia.202401074\u00a0<\/em><\/p>

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Robust Bisulfite-Free Single-Molecule Real-Time Sequencing of Methyldeoxycytidine Based on a Novel hpTet3 Enzyme<\/strong>,<\/h3>

H. Sahin, R. Salehi, S. Islam, M. M\u00fcller, P. Giehr, T. Carell\u00a0<\/p>

Angew. Chem. Int. Ed. 2024<\/strong>, 10.1002\/anie.202418500\u00a0<\/em><\/p>

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Endo-bind-n-seq: identifying RNA motifs of RNA binding proteins isolated from endogenous sources<\/h3>

Tiana Nicole Hanelt, Nora Treiber, Thomas Treiber, Gerhard Lehmann, Norbert Eichner, Tamara Rothmeier, Georg Schmid, Robert Reichelt, Federico Zambelli, Giulio Pavesi, Dina Grohmann, Gunter Meister.<\/p>

Life Sci Alliance. 2024;8(2):e202402782. Published 2024<\/strong> Dec 2. <\/em><\/p>

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X-linked deletion of Crossfirre<\/i>, Firre<\/i>, and Dxz4<\/i> in vivo uncovers diverse phenotypes and combinatorial effects on autosomes<\/h3>

Tim P. Hasenbein, Sarah Hoelzl, Zachary D. Smith, Chiara Gerhardinger, Marion O. C. Gonner, Antonio Aguilar-Pimentel, Oana V. Amarie, Lore Becker, Julia Calzada-Wack, Nathalia R. V. Dragano, Patricia da Silva-Buttkus<\/span>, Lillian Garrett, Sabine M. H\u00f6lter, Markus Kraiger, Manuela A. \u00d6stereicher, Birgit Rathkolb, Adri\u00e1n Sanz-Moreno, Nadine Spielmann, Wolfgang Wurst, Valerie Gailus-Durner, Helmut Fuchs, Martin Hrab\u011b de Angelis, Alexander Meissner, Stefan Engelhardt, John L. Rinn, Daniel Andergassen.<\/p>

Nature Communications <\/b>volume<\/span>\u00a015, Article\u00a0number:\u00a010631 (2024<\/strong>)<\/em><\/p>

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Efficient Tandem Cu-Catalyzed Click Synthesis of Multi-Sugar-Modified Oligonucleotides<\/strong><\/h3>

Annika J. T\u00f6lke, Julia F. Gaisbauer, Yasmin V. G\u00e4rtner, Babara Steigenberger, Anna Holovan, Filip Streshnev, Sabine Schneider, Markus M\u00fcller, Thomas Carell.
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Angew. Chem. Int. Ed. Engl. 2024<\/strong>, e202405161, doi: 10.1002\/anie.202405161<\/em>
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Lipoamino bundle LNPs for efficient mRNA transfection of dendritic cells and macrophages show high spleen selectivity<\/strong><\/h3>

Franziska Haase, Jana P\u00f6hmerer, Mina Yazdi, Melina Grau, Yanira Zeyn, Ulrich Wilk, Tobias Burghardt, Miriam H\u00f6hn, Christoph Hieber, Matthias Bros, Ernst Wagner\u00a0<\/sup>,\u00a0Simone Berger. <\/i><\/p>

Eur. J. Pharm. Biopharm. 2024<\/strong>, 95-109, doi: 10.1016\/j.ejpb.2023.11.025.
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An Aminoisoxazole-Based Proto-RNA<\/strong><\/h3>

Felix Xu, Stefan Wiedemann, Jonas Feldmann, Sidney Becker and Thomas Carell.<\/p>

Chem. Europe, <\/em>2023<\/strong>, e202300057<\/em>, doi: 10.1002\/ceur.202300057\u00a0
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Trimannose-coupled antimiR-21 for macrophage-targeted inhalation treatment of acute inflammatory lung damage<\/strong><\/h3>

Christina Beck, Deepak Ramanujam, Paula Vaccarello, Florenc Widenmeyer, Martin Feuerherd, Cho-Chin Cheng, Anton Bomhard, Tatiana Abikeeva, Julia Sch\u00e4dler, Jan-Peter Sperhake, Matthias Graw, Seyer Safi, Hans Hoffmann, Claudia A. Staab-Weijnitz, Roland Rad, Ulrike Protzer, Thomas Frischmuth, Stefan Engelhardt.<\/p>

Nat. Commun. 2023<\/strong>, 14, 4564. doi: 10.1038\/s41467-023-40185-1
<\/em>Link to publication <\/a><\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>","protected":false},"excerpt":{"rendered":"

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